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Department of
Environmental &
Biomolecular Systems
20000 NW Walker Rd
Beaverton, OR 97006
Phone: (503) 748-1070
Fax: (503) 748-1464
info@ebs.ogi.edu



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EBS
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EBS Events
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BME Department Seminars
CSEE Department Seminars
Date Title
05/08/08 Looking for 70 student research oral presenters
05/08/08 25th Annual OHSU Student Research Forum: May 8-9
05/07/08 Masao Ikeda-Saito: Structure and Catalytic Mechanism of Heme Oxygenase
04/18/08 13th Annual Alumni Dinner: Department of Environmental and Biomolecular Systems
04/11/08 Ken Stedman: Viruses from Hell: Finding, Characterizing and Modifying Extreme Viruses.
04/04/08 Mark Hildebrand: Insights into Diatom Biomineral Formation by Imaging, Genomic, and Transgenic Approaches
03/27/08 Tiffany Gregg: Suspended Particulate Matter (SPM) Transport of Polycyclic Aromatic Hydrocarbons (PAHs) in the Columbia River and its Estuary
03/18/08 IEEE PACE: Energy Futures - Air, Water and Land impacts
03/14/08 2nd Annual EBS Research Symposium, Department of Environmental and Biomolecular Systems
03/10/08 Takashi Hayashi: Hemoproteins Reconstituted with Artificially Created Prosthetic Groups
03/07/08 Michael S. Chapman: More Than Structure: Stereoelectronics and Dynamics in Arginine Kinase
03/04/08 Sandra Oster: What's This NSF Thing, Broader Impact??
02/27/08 Oregon Bioscience Career and Internship Fair
02/22/08 Anne Johansen: Iron in the Atmosphere; Implications on Global Climate and Human Health
02/20/08 Nobuhumi Nakamura: Artificial Electron Donors Support Enzymatic Reaction of Thermophilic Cytochrome P450 from Sulfolobus tokodaii Strain 7
02/19/08 Coastal Margin Observation & Prediction (CMOP) Open House
02/15/08 Marina G. Kalyuzhnaya: Exploring Microbial Function Without Cultivation: From Metagenomics to Single Cell Analysis
02/13/08 A Seminar: Writing a CV and Cover Letter
02/13/08 Timothy J. Cowles: Persistent Finescale Planktonic Structure: Resolving the Balance Between Vertical and Horizontal Biological and Physical Processes
02/10/08 Chinese New Year Celebration sponsored by the Chinese Students and Scholars Association (CSSA)
02/08/08 Vaishnavi Sarathy: Engineered Remediation and Natural Attenuation of Halogenated Alkanes: A Study of Contaminant Reactivity and Reductant Morphology (oral defense of dissertation)
02/05/08 Sandra Oster: The Resubmission Introduction: Tone Control, Organization, and Content
02/01/08 Elsa Chang: Modeling of Thermodynamic Equilibrium in Multi-phase Organic/Electrolyte/Water Mixtures and the Applications to Predictions of Atmospheric Aerosol (oral defense of dissertation)
01/18/08 Amaro E. T. Silva: Secondary Metabolism of Teredinibacter turnerae, a Bacterial Symbiont of Shipworms
01/11/08 Engineers' Night: Part 2
01/08/08 Sandra Oster: Top 5 Strategies for Writing Concretely and Clearly
12/13/07 George Luther: Application of in-situ chemical sensors for studies in the Delaware Bay and the hydrothermal vents of Yellowstone and the deep Pacific
12/05/07 Sandra Oster: Strategies for Shortening the Text in a Grant Proposal and Other Documents
11/30/07 BME Seminar: Kellar Autumn - "Gecko Adhesion: Evolutionary Nanotechnology"
11/29/07 James Bellingham: Reconfiguring Ocean Observation Systems in Real Time
11/27/07 Bill Bradbury: "Global Warming And Its Impact On Oregon"
11/23/07 Thanksgiving Holiday: No EBS Dept. Seminar Today
11/20/07 Percy Donaghay: High-resolution 4-dimensional Coherent Sampling with Autonomous Moored Profilers
11/16/07 Matthew S. Sachs and group: Goodbye Party
11/15/07 John M. E. Storey: "Idling Trucks and Mobile Source Air Toxics: Measurements in the Real World"
11/09/07 Cheng Wu: "Study of Translational Control using Cell-free Translation Systems and Primer Extension Inhibition Assays"
11/09/07 Christine E. Salomon: "Harnessing the Biochemical Potential of Natural Products: Implications for Drug Discovery and Chemical Ecology"
11/06/07 Don't Forget to Vote!
11/02/07 Treavor A. Kendall: Biological Transformation of Inorganic Surfaces: Implications for Environmental Systems
10/30/07 Andrew Rose: The Effect of Superoxide on Iron Bioavailability in Marine Waters
10/26/07 Kristen N. Buck: Chemical Speciation of Copper and Iron in the Marine Environment: New Implications for Toxicity and Bioavailability
10/19/07 Xihou Yin: Genetic, Biochemical and Chemical Approaches to Natural Product Antibiotics Biosynthesis
10/12/07 Eric Schmidt: Biosynthesis of Marine and Terrestrial Natural Products
10/05/07 Mariya Smit: CombiMatrix Oligonucleotide Arrays: Genotyping and Gene Expression Assays Employing Electrochemical Detection
09/28/07 Suzanna L. Bräuer: Carbon and Manganese Cycling in the Columbia River Estuary
09/14/07 Amanda Barry: Spectroscopic Studies of the Human Copper Chaperone for Superoxide Dismutase: Probing the Active Cluster with Selenocysteine Variants
09/07/07 Ying Zhang: Ph.D. Dissertation Defense: Function of Spx and Its Control by Proteolysis
09/06/07 Petra Levin: Sugar Shock: A Metabolic Sensor Governing Cell Size in Bacteria
08/24/07 Dean P. Moberg: Dissertation Defense: Cool Season Mineralization of Recalcitrant Organic Nitrogen in Manured Soils
08/20/07 Sergey Frolov: Dissertation Defense: Enabling Technologies for Fast Nonlinear Data Assimilation in a Coastal Margin Observatory
08/14/07 NSF Research Experience for Undergraduates: Open House
08/10/07 Yuk Ki Lee: M.S. Thesis Defense: The Electronic Structure of the Tyr-Cys Free Radical in Galactose Oxidase Determined by EPR Spectroscopy"
08/06/07 Montira Leelakriangsak: Ph.D. Dissertation Defense: The Transcriptional Control of Spx in Response to Oxidative Stress
07/09/07 Kenneth Bruland: CMOP Distinguished Lecture: Macronutrients and Iron in U.S. Coastal Upwelling Regimes--along with Insight into the Columbia River Plume
06/14/07 Anabela Oliveira and Andre Fortunato:
Research Directions in Estuarine and Coastal Modeling at LNEC
06/07/07 Hao Geng: Ph.D. dissertation defense: ResDE-dependent Transcriptional Control in Response to Oxygen Limitation
05/11/07 R. Lee Penn: Chemical, Physical, and Structural Properties of Iron Oxide Nanoparticles
05/07/07 Tawnya D. Peterson: Phytoplankton Ecology in the Context of Anthropogenic Forcing and Climate Variability
04/27/07 Yinglong (Joseph) Zhang: Coastal and Estuarine Circulation Model: A Reality Check
04/20/07 12th Annual Alumni Dinner: Dept. of Environmental and Biomolecular Systems
04/20/07 Victoria DeRose: Metal-RNA Interactions and Ribozyme Catalysis
04/13/07 Peter Schupp: Chemical and Microbial Ecology: Examples from Micronesian Ascidians and Sponges
04/10/07 STUDENTS: Order Caps and Gowns for Commencement With On Campus Representative
04/10/07 Dianne Greenfield: From Microscopy to Molecular Observing Systems: An Integrative Approach to Phytoplankton Ecology
04/06/07 Simon de Vries: The Role of a Tryptophan Radical in the Cytochrome Oxidase Catalytic Cycle
04/04/07 Joseph Needoba: Modern Approaches to Investigate Marine Biocheochemistry
03/16/07 EBS Student and Postdoc Poster Presentations
03/09/07 Matthew R. Parsek: Relationships Between Swarming Motility, Quorum Sensing, and Biofilm Formation in Pseudomonas aeruginosa
02/23/07 Chuanlun Zhang: Ecological and Evolutionary Implications of Novel Archaeal Organisms in Terrestrial Hot Springs
02/21/07 Christopher Scholin: Design and Operation of the Environmental Sample Processor (ESP)
02/16/07 Elena S. Peterson: Strategies for Collecting and Managing Experimental Data for Future Analysis
02/09/07 David Ralston: Stratification and Scalar Fluxes in Strongly Forced Estuaries
02/02/07 Heather Hood: Refinement of the Neurospora crassa Genome Annotation
02/01/07 Nathaniel Hyde: Toward National Estuarine Modeling and Characterization/Classification Systems: A Pilot Study for Coos Bay
01/26/07 Alexandria B. Boehm: Oceans and Human Health: Microbial Pollution at Recreational Beaches
01/19/07 Alexey Shvarev: Ion-Selective Sensors: New Frontiers
12/22/06 Clinton Church: The Environmental Fate of MTBE
11/17/06 Petr Kuzmic: "Bio/Chemical Kinetics Made Easy"
11/10/06 Yuehe Lin: "Biosensors Based on Functional Nanomaterials"
11/03/06 Nabil Alkayed: "Soluble Epoxide Hydrolase: A Novel Therapeutic Target in Stroke"
10/28/06 Memorial Service: L.E.L. "Bets" Rasmussen
10/27/06 (1) Sergey Frolov: "Data Assimilation in the Columbia River Estuary and Plume" (2) Erik Yukl: "A Heme-based Sensor Protein DevS: Revealing Structure/Function Relationships with Resonance Raman Spectroscopy"
10/20/06 Ann Miracle: "Predictive EcoSystems Science"
10/19/06 Jing Xu: Oral disseration defense: "Luteinizing Hormone-Regulated Genes and the Corticotropin Releasing Hormone/ Urocortin-Receptor-Binding Protein System in the Primate Corpus Luteum during the Menstrual Cycle"
10/13/06 Diana Northup: "Biogenicity of Ferromanganese Deposits: Revelations from the Subsurface and Surface"
10/06/06 1) Michela Burla: "Salmon and Hydropower: How Useful is Virtual Reality?" 2) Lydie Herfort: "Diversity and Abundance of Archaea and Potential for Nitrification in the North Sea and the Rivers Rhine and Tet"
10/05/06 Mak Saito: "The Interactions Between the Marine Biogeochemical Cycles of Cobalt and Vitamin B12"
06/09/06 Tania Vu: Nanoparticle Quantum Dots for Neuromodulation and Bioassay
06/05/06 Christina C. Spevak: Specific Requirements for Translational Regulation by a Nascent Peptide that Stalls Ribosomes in Response to Arginine
06/02/06 OHSU Commencement
05/26/06 Seana Davidson: Bacterial Partners of Global Soil Engineers, the Earthworms
05/19/06 Heidi Sofia: Advanced Tools for Genome Analysis
05/05/06 Stephen Giovannoni: Genome Streamlining in Cosmopolitan Marine Bacteria
04/28/06 Mingdi Yan: Surface and Interface Engineering: Thin Film, Single Molecule, and Microarray
04/21/06 Dennis R. Koop: P450, Lipid Metabolism and the BSR/PKCore
04/07/06 Craig R. Anderson: Intra-Terrestrial Biosorption of Radionuclides and Analogous Trace Elements
03/20/06 Use of Stable Isotope Fractionation to Assess Organic Pollutant Transformation in Contaminant Hydrology (2006 AEESP Distinguished Lecture by Rene Schwarzenbach)
03/17/06 Daniel Kosman: Shall We Dance? How a Multicopper Oxidase Chooses Its Electron Transfer Partner
03/10/06 Andrew H. Barnard: Temporal and Spatial Scales of Variability in Particulate and Dissolved Materials Associated with Specific Land-Use Activities Within the Penobscot River System, Maine
03/03/06 (1) Vaishnavi Sarathy: Benefits of Nano-Sized Iron for Remediation of Chlorinated Solvents. (2) Ying Zhang: Mutational Analysis of Bacillus subtilis RNA polymerase Alpha C-terminal Domain Supports Interference Model of Spx-dependent Repression
02/24/06 Charles S. Springer, Jr.: The Prospects for Quantitative Molecular MR Imaging at High Magnetic Field
02/17/06 Julio de Paula: From Plant Biology to Nanoscience: Molecular Photonics with Porphyrins
02/10/06 Kelley Barsanti: A General Theoretical Method for Evaluating the Formation of High-Molecular Weight/Low-Volatility Compounds and Their Contribution to Atmospheric Aerosols
02/03/06 Brian T. Glazer: In Situ Investigations of Geomicrobial Synergy Within Oxic-Anoxic Transition Zones
01/27/06 (1) Amanda Barry: Spectroscopic Studies of the Human Copper Chaperone for Superoxide Dismutase. (2) Elsa Chang: Thermodynamic Modeling for Aerosol Formation.
01/13/06 Caroline Harwood: Development of a Model Bacterial System for Hydrogen Production
12/15/05 Jay P. Stasser: X-ray Absorption Spectroscopy of Copper: Characterization of the Human Copper Chaperone to Superoxide Dismutase
12/02/05 Michael E. P. Murphy: Mechanistic Insights into an Enzyme of Environmental Interest: Nitrite Reductase
11/18/05 Kyle R. Gee: Fluorescent Sensors for Metal Ions in Live Cells
11/11/05 Matthew J. La Force: Plants Do Not Levitate! The Unique Geochemistry of Serpentine Soils at The Presidio, California
11/04/05 Kevin A. Reynolds: Engineering Natural Product Biosynthetic Processes
10/28/05 Clare Reimers: Ocean Microbial Fuel Cells
10/14/05 Diana J. Bigelow: 3-Nitrotyrosine and Its Biological Implications for Aging Muscle
10/13/05 Paul Tratnyek: Nanoscience Frontiers: Practical Implications of the Reactivity of Nanoparticles
10/07/05 Jay L. Mellies: Control of Virulence in Enteropathogenic Escherichia coli
09/06/05 Characterization of Nitrosyl, Azido, and Carbonyl Complexes in Diiron Enzymes and Their Implications for O2 and NO Activation
05/27/05 Jeff Karpen: Chemical and Physical Approaches to the Study of Cyclic Nucleotide Signaling
05/26/05 Heng-Yen Pan: Characterization of Recombinant Wheat Germin Expressed by Pichia pastoris
05/23/05 The Saccharomyces cerevisiae Arginine Attenuator Peptide Regulates Translation and mRNA Decay
05/20/05 Scott Reed: The Interface Between Nanomaterials and Medicine
05/19/05 Jia Dai: Structure-Function Studies with the Mitochondrial Carnitine Palmitoyltransferase I and II
04/29/05 Angela Hoffman: New Sources for Taxol and Other Active Natural Compounds
04/01/05 Stephen Hanson: Introduction to Biomedical Engineering
03/11/05 Brian Wood: Biofilms in Porous Media: Upscaling from the Cell to the Field
03/07/05 Aaron P. Racicot: Application of Web-Based GIS in Coastal Margin Observatories
03/04/05 Michael S. Bartlett: Topography of the Archaeal Transcription Initiation Complex: Transcription Factor TFB Positioning and Redundancy
03/04/05 10th Annual Alumni Dinner
Dept. of Environmental and Biomolecular Systems
02/16/05 The Gas/Particle Partitioning of Nicotine and Menthol from Mainstream Tobacco Smoke
02/15/05 Kinetic Modeling of Heterogeneous Chemical Reactions with Applications to the Reduction of Environmental Contaminants on Iron Metal
02/04/05 Mary Abrams: From Biomonitoring to Biomonitoring
01/14/05 Antonio M. Baptista: Tsunami!
12/03/04 Daniel J. Arp: Insights to the Physiology and Ecology of the Ammonia Oxidizer, Nitrosomonas europaea, from the Whole Genome Sequence
11/19/04 Beate Escher: Mode-of-Action-Based Ecotoxicological Risk Assessment
11/12/04 Physical Processes and Aquatic Particles
11/05/04 CANCELLED: Fred J. Brockman: Microbial Syntrophic Interactions: Nature or Nurture?
10/29/04 Erik J. Sanchez: Advancing Near-field Microscopy for Biological and Material Applications
10/22/04 Cory Bystrom: Proteomics: The OHSU Shared Resource
10/15/04 Walt Nelson: From Marshes to the Continental Shelf: Overview and Results of the Western Component of the USEPA National Coastal Assessment
10/08/04 Paul G. Tratnyek: The Reactivity of Metallic Iron Nanoparticles: Spectroscopy, Electrochemistry, Kinetics, Environmental Engineering Applications, and Implications for Medical Diagnosis and Therapy
10/01/04 Steven M. Barnett: FTIR Imaging Advances in Materials Science
09/24/04 Determination of the Rate of Contaminant Oxidations by Permanganate: Implications for In Situ Chemical Oxidation (ISCO)
05/21/04 Trichloroethylene (TCE) from the Ground Up: Contaminated Sites, Health Effects, and Remediation Strategies
05/14/04 Dorthe Wildenschild: Application of Synchrotron-based Micro-imaging in the Environmental Sciences: A Pore Scale View of Flow Processes in Porous Media
05/07/04 Steven Wiley: A Systems Approach for Understanding Cell Signaling
04/30/04 Stewart Rounds: Predicting Dissolved Oxygen Concentrations in the Tualatin River with Neural Network Models
04/23/04 Edward A. Neuwelt: Mechanisms of Disease and the Blood-Brain Barrier: Is There a Role for Nanoparticles?
04/16/04 Donald R. Baer: Nanoscience and Nanotechnology: Fact, Fiction, and Future
04/09/04 Reuben H. Simoyi: Mechanistic Basis of Physiological Effects of Organosulfur Compounds
03/12/04 Byron Crump: Microbial Biogeography in Estuaries: The Combined Influences of Growth Rate, Advection, and Residence Time
02/27/04 Kevin M. Rosso: Electron Transfer in Iron Oxides: Small Polaron Models of Electron Transport
02/27/04 9th Annual Alumni Dinner, Dept. of Environmental and Biomolecular Systems
02/20/04 Ninian J. Blackburn: X-ray Absorption Spectroscopy: Adventures in Copper, Zinc, Iron and Selenium Biochemistry
02/13/04 Andrew Ford: System Dynamics Modeling of Environmental Systems: Examples from Modeling the Environment
02/06/04 David H. Peyton:
Sensing intermolecular interactions by nuclear magnetic resonance
01/30/04 Pamela Lein: Cell and Molecular Mechanisms of Developmental Neurotoxicity
01/23/04 Peter Zuber: A Novel Regulator of the Bacterial Oxidative Stress Response
01/16/04 David Jay: Historical Changes in Lower Columbia River Salmon Habitat

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